Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

SIK-ISEA uses Avizo software to understand 19th century painting techniques

SIK-ISEA uses Avizo software to understand 19th century painting techniques

The characterization of the porosity of ground layers in easel paintings: a first step towards understanding its role in water uptake, reactivity and material transport in 19th and early 20th century paintings. The Swiss Institute for Art Research (SIK-ISEA) is studying the studio practice of Swiss painters of the late 19th early 20th century, the materials they used for their paintings, and the deterioration processes the paintings undergo as they age.

Amongst other issues this study... Read more

SIK-ISEA

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University of Washington researchers use Amira software towards aiding the pathology of pancreatic cancer

University of Washington researchers use Amira software towards aiding the pathology of pancreatic cancer

For nearly 100 years, pathology for cancer diagnosis has involved a standard, but complex series of steps to process tissue biopsies procured from a patient in the clinic. Many procedures are a direct result of the fact that observation and evaluation of specimens by pathologists occur using a standard microscope (in 2D).

In 2014, the Human Photonics Laboratory at the University of Washington demonstrated that the rudimentary operations of a pathology laboratory may be replicated on wh... Read more

Ronnie Das, PhD and Eric J. Seibel, PhD

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The Brazilian Synchrotron Light Laboratory (LNLS) uses Avizo to visualize and analyze scientific and industrial 3D data acquired with their X-Ray Imaging Beamline (IMX)

The Brazilian Synchrotron Light Laboratory (LNLS) uses Avizo to visualize and analyze scientific and industrial 3D data acquired with their X-Ray Imaging Beamline (IMX)

The imaging beamline, IMX, at LNLS extracts synchrotron radiation from bending magnet D6 with magnetic field of 1.67 T and bending radius of 2.736 m. It has an electron source size of 391 Read more

Brazilian Synchotron Light Laboratory

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The London Centre for Nanotechnology uses Avizo Software to reveal structure of human chromosomes and nucleus in 3D

The London Centre for Nanotechnology uses Avizo Software to reveal structure of human chromosomes and nucleus in 3D

A team led by London Centre for Nanotechnology researchers, Prof. Ian Robinson and Dr. Bo Chen (now a professor at the Tongji University, Shanghai) used newly-developed serial block-face scanning electron microscopy (SBFSEM) and Thermo Scientific™ Avizo® Software, one dominant tool in 3D reconstructed image processing, to reveal the spatial structure of human chromosomes and nucleus quantitatively at high resolution of approximately 50 nm in three dimensions.

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Prof. Ian Robinson, Dr. Bo Chen, London Centre for Nechnology, UCL and Tongji University

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The Academic Medical Center (AMC) uses Amira to build a 3D Atlas for Human Embryology

The Academic Medical Center (AMC) uses Amira to build a 3D Atlas for Human Embryology

The 3D Atlas of Human Embryology project was funded by the Academic Medical Center (AMC) in Amsterdam, the Netherlands, in 2009. Since then, over 75 students, under the supervision of embryologists of the Department of Anatomy, Embryology & Physiology, have contributed to this labor-int... Read more

Academic Medical Center

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The Max Planck Institute of Neurobiology uses Amira software for axon tracing from head to toe

The Max Planck Institute of Neurobiology uses Amira software for axon tracing from head to toe

Ali Ertürk and his collaborators described a novel histo-chemical technique to clear spinal cord tissue of adult mice for fluorescence microscopy imaging of the intact spinal cord.

Previously, the high lipid content of the spinal cord tissue in adult mice allowed imaging of the spinal cord only through destructive histological methods, making the tracing of complete axons impossible. As applied in this study, the improved histo-chemistry enabled Ertürk and his colleagues to show that... Read more

Ali Ertürk, Christoph P Mauch, Farida Hellal, Friedrich Förstner, Tara Keck, Klaus Becker, Nina Jährling, Heinz Steffens, Melanie Richter, Mark Hübener, Edgar Kramer, Frank Kirchhoff, Hans Ulrich Dodt & Frank Bradke

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