Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

Unilever uses Avizo software to visualize and understand food and detergent structures

Unilever uses Avizo software to visualize and understand food and detergent structures

Food and detergent products are composed of complex micro structures. With modern microscopic techniques we can make them visible. The microstructure greatly affects macroscopic properties such as appearance, taste, mouth feel and solubility. Making these structures visible and quantifying them is essential to the development of products with optimal product properties. A broad range of imaging techniques is used to visualize microstructure elements at different length scales. For example, X-... Read more

Gerard van Dalen, Unilever R&D Vlaardingen (The Netherlands)

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Human liver segments: role of cryptic liver lobes and vascular physiology in the development of liver veins and left-right asymmetry

Human liver segments: role of cryptic liver lobes and vascular physiology in the development of liver veins and left-right asymmetry

Couinaud based his well-known subdivision of the liver into (surgical) segments on the branching order of portal veins and the location of hepatic veins. However, both segment boundaries and number remain controversial due to an incomplete understanding of the role of liver lobes and vascular physiology on hepatic venous development. Human embryonic livers (5–10 weeks of development) were visualized with Amira 3D-reconstruction and Cinema 4D-remodeling software.

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Jill P. J. M. Hikspoors, Mathijs M. J. P. Peeters, Nutmethee Kruepunga, Hayelom K. Mekonen, Greet M. C. Mommen, S. Eleonore Köhler & Wouter H. Lamers

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L4iS uses Avizo software to analyze 3D images from laser ablation tomography

L4iS uses Avizo software to analyze 3D images from laser ablation tomography

Lasers for Innovative Solutions, LLC (L4iS) is developing a new class of tomography technology with the aim of allowing material characterization in three dimensions with sub-micron resolution. The method uses a nanosecond, Q-switched, pulsed ultraviolet laser coupled with high-resolution imaging to generate highly detailed specimen models. Using this system, sequential images similar to light-sheet fluorescence microscopy are used to digitally reconstruct the specimen.

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Brian Reinhardt and Benjamin Hall, L4iS (USA)

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FAMU uses Avizo software to visualize and understand heat transfer and fluid flow

FAMU uses Avizo software to visualize and understand heat transfer and fluid flow

The CHEFF (Computational Heat Fluid Flow) Research group at Florida Agricultural & Mechanical University is using computational fluid dynamics to model flow and heat transfer in various engineering applications for industry, government and the private sector. The primary goal of this research is to first examine and then enhance the thermal performance of current and future low-density reticulated porous media, and explore their use as heat sinks in high power electronics (computer chips... Read more

CHEFF Research Group at Florida Agricultural & Mechanical University: Dr. G.D. Wesson, Professor of Chemical Engineering/Biological Agricultural Systems Engineering, Shawn Austin (Graduate student), Shari Briggs (Graduate student), Mellissa McCole (Graduate student), David Mosley (Graduate student)

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University of Glasgow uses Amira software to analyze vascular structures

University of Glasgow uses Amira software to analyze vascular structures

The vascular (arterial or venous) wall is a fascinating structure. At the simplest level, we can think of the wall as being composed of three distinct, but interacting, layers . The vascular wall changes its structure in conditions such as hypertension which can cause a thickening of the wall. Unfortunately, the details of this ‘remodeling’ process are poorly understood.

Therefore, studying the 3D architecture may provide vital clues for future therapeutic targets.

R... Read more

Dr. Craig J Daly, School of Life Sciences, College of Medical Veterinary & Life Sciences, University of Glasgow

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KTH Royal Institute of Technology uses Avizo software to visualize and characterize the internal structure of civil engineering materials

KTH Royal Institute of Technology uses Avizo software to visualize and characterize the internal structure of civil engineering materials

The Division of Highway and Railway Engineering, Royal Institute of Technology (KTH) promotes advances in computational and experimental science in order to develop new materials, tools and systems for improved mobility, transportation safety and infrastructure durability. The group works on analysis and performance-based design of roads and tracks, management as well as operation and maintenance of roads.

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Denis Jelagin, Alvaro Guarin, Ibrahim Onifade, Nicole Kringos, and Bjorn Birgisson (KTH)

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SIK-ISEA uses Avizo software to understand 19th century painting techniques

SIK-ISEA uses Avizo software to understand 19th century painting techniques

The characterization of the porosity of ground layers in easel paintings: a first step towards understanding its role in water uptake, reactivity and material transport in 19th and early 20th century paintings. The Swiss Institute for Art Research (SIK-ISEA) is studying the studio practice of Swiss painters of the late 19th early 20th century, the materials they used for their paintings, and the deterioration processes the paintings undergo as they age.

Amongst other issues this study... Read more

SIK-ISEA

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University of Washington researchers use Amira software towards aiding the pathology of pancreatic cancer

University of Washington researchers use Amira software towards aiding the pathology of pancreatic cancer

For nearly 100 years, pathology for cancer diagnosis has involved a standard, but complex series of steps to process tissue biopsies procured from a patient in the clinic. Many procedures are a direct result of the fact that observation and evaluation of specimens by pathologists occur using a standard microscope (in 2D).

In 2014, the Human Photonics Laboratory at the University of Washington demonstrated that the rudimentary operations of a pathology laboratory may be replicated on wh... Read more

Ronnie Das, PhD and Eric J. Seibel, PhD

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The London Centre for Nanotechnology uses Avizo Software to reveal structure of human chromosomes and nucleus in 3D

The London Centre for Nanotechnology uses Avizo Software to reveal structure of human chromosomes and nucleus in 3D

A team led by London Centre for Nanotechnology researchers, Prof. Ian Robinson and Dr. Bo Chen (now a professor at the Tongji University, Shanghai) used newly-developed serial block-face scanning electron microscopy (SBFSEM) and Thermo Scientific™ Avizo® Software, one dominant tool in 3D reconstructed image processing, to reveal the spatial structure of human chromosomes and nucleus quantitatively at high resolution of approximately 50 nm in three dimensions.

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Prof. Ian Robinson, Dr. Bo Chen, London Centre for Nechnology, UCL and Tongji University

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The Max Planck Institute of Neurobiology uses Amira software for axon tracing from head to toe

The Max Planck Institute of Neurobiology uses Amira software for axon tracing from head to toe

Ali Ertürk and his collaborators described a novel histo-chemical technique to clear spinal cord tissue of adult mice for fluorescence microscopy imaging of the intact spinal cord.

Previously, the high lipid content of the spinal cord tissue in adult mice allowed imaging of the spinal cord only through destructive histological methods, making the tracing of complete axons impossible. As applied in this study, the improved histo-chemistry enabled Ertürk and his colleagues to show that... Read more

Ali Ertürk, Christoph P Mauch, Farida Hellal, Friedrich Förstner, Tara Keck, Klaus Becker, Nina Jährling, Heinz Steffens, Melanie Richter, Mark Hübener, Edgar Kramer, Frank Kirchhoff, Hans Ulrich Dodt & Frank Bradke

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