Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

Chromosome segregation occurs by microtubule pushing in oocytes

Chromosome segregation occurs by microtubule pushing in oocytes

During cell division, spindle microtubules ensure an equal repartition of chromosomes between the two daughter cells. While the kinetochore-dependent mechanisms that drive mitotic chromosome segregation are well understood, in oocytes of most species atypical spindles assembled in absence of centrosomes entail poorly understood mechanisms of chromosome segregation. In particular, the structure(s) responsible for force generation during meiotic chromosome separation in oocytes is unclear. Usin... Read more

Kimberley Laband, Rémi Le Borgne, Frances Edwards, Marine Stefanutti, Julie C. Canman, Jean-Marc Verbavatz, Julien Dumont

Read full paper
Durable and self-hydrating tungsten carbide-based composite polymer electrolyte membrane fuel cells

Durable and self-hydrating tungsten carbide-based composite polymer electrolyte membrane fuel cells

Proton conductivity of the polymer electrolyte membranes in fuel cells dictates their performance and requires sufficient water management. Here, we report a simple, scalable method to produce well-dispersed transition metal carbide nanoparticles. We demonstrate that these, when added as an additive to the proton exchange Nafion membrane, provide significant enhancement in power density and durability over 100 hours, surpassing both the baseline Nafion and platinum-containing recast Nafion ... Read more

Weiqing Zheng, Liang Wang, Fei Deng, Stephen A. Giles, Ajay K. Prasad, Suresh G. Advani, Yushan Yan & Dionisios G. Vlachos

Read full paper
X-ray tomography-assisted study of a phase inversion process in ceramic hollow fiber systems – Towards practical structural design

X-ray tomography-assisted study of a phase inversion process in ceramic hollow fiber systems – Towards practical structural design

In this study, a series of alumina hollow fibers have been prepared with varied polymer binder (polyethersulfone, PESf) concentration and new polymer-based internal coagulant (aqueous solution of polyvinyl alcohol, PVA). For the first time, the micro-channels were characterized in 3D using X-ray CT to determine micro-channel densities and diameters in the radial direction, as well as the 2D measurement of the pore size in the sponge-like layer.

Read more

Tao Li, Xuekun Lu, Bo Wang, Zhentao Wu, Kang Li, Dan J.L. Brett, Paul R. Shearing

Read full paper
Influence of Deformation and Stress between Bone and Implant from Various Bite Forces by Numerical Simulation Analysis

Influence of Deformation and Stress between Bone and Implant from Various Bite Forces by Numerical Simulation Analysis

Endosseous oral implant is applied for orthodontic anchorage in subjects with multiple tooth agenesis. Its effectiveness under orthodontic loading has been demonstrated clinically and experimentally. This study investigates the deformation and stress on the bone and implant for different bite forces by three-dimensional (3D) finite element (FE) methods. A numerical simulation of deformation and stress distributions around implants was used to estimate the survival life for implants. The model... Read more

Hsin-Chung Cheng, Boe-Yu Peng, May-Show Chen, Chiung-Fang Huang, Yi Lin, and Yung-Kang Shen

Learn more
A multianalytic investigation of weapon-related injuries in a Late Antiquity necropolis, Mutina, Italy

A multianalytic investigation of weapon-related injuries in a Late Antiquity necropolis, Mutina, Italy

Human skeletal remains from archaeological contexts occasionally present signs of traumatic injuries from weapons, revealing, for example, the degree of interpersonal violence, the type of weapon and the sequence of events of a specific historical context.

Traumatic lesions are generally analyzed using macroscopic and microscopic methods, which are not necessarily integrated in the same study. In this study, we employed a multi-analytical approach to determine i... Read more

Antonino Vazzana, Lucia Martina Scalise, Mirko Traversari, Carla Figus, Salvatore Andrea Apicella, Laura Buti, Gregorio Oxilia, Rita Sorrentino, Silvia Pellegrini, Chiara Matteucci, Lucio Calcagnile, Raffaele Savigni, Robin N.M.Feeney, Giorgio Gruppioni, Stefano Benazziah

Read full paper
A Middle Triassic pachypleurosaur (Diapsida: Eosauropterygia) from a restricted carbonate ramp in the Western Carpathia

A Middle Triassic pachypleurosaur (Diapsida: Eosauropterygia) from a restricted carbonate ramp in the Western Carpathia

An eosauropterygian skeleton found in the Middle Triassic (upper Anisian) Gutenstein Formation of the Fatric Unit (Demänovská dolina Valley, Low Tatra Mountains, Slovakia) represents the earliest known occurrence of marine tetrapods in the Western Carpathians. The specimen represents a partly articulated portion of the postcranial skeleton (nine dorsal vertebrae, coracoid, ribs, gastral ribs, pelvic girdle, femur and one zeugopodial element). It is assigned to the Pachypleurosauria, more pr... Read more

ANDREJ ČERŇANSKÝ, NICOLE KLEIN, JÁN SOTÁK, MÁRIO OLŠAVSKÝ, JURAJ ŠURKA, and PAVEL HERICH

Read full paper
EM connectomics reveals axonal target variation in a sequence-generating network

EM connectomics reveals axonal target variation in a sequence-generating network

The sequential activation of neurons has been observed in various areas of the brain, but in no case is the underlying network structure well understood. Here we examined the circuit anatomy of zebra finch HVC, a cortical region that generates sequences underlying the temporal progression of the song. We combined serial block-face electron microscopy with light microscopy to determine the cell types targeted by HVC(RA) neurons, which control song timing. Close to their soma, axons... Read more

Jörgen Kornfeld, Sam E Benezra, Rajeevan T Narayanan, Fabian Svara, Robert Egger, Marcel Oberlaender, Winfried Denk, Michael A Long

Read full paper
Glass fiber length and orientation analysis of reinforced polymers (GFRP)

Glass fiber length and orientation analysis of reinforced polymers (GFRP)

Royal DSM is a global science-based company active in health, nutrition and
materials. Within DSM’s Materials Cluster DSM Engineering Plastics is a global player in specialty plastics. These materials are used in components for the electrical and electronics, automotive, flexible food packaging and consumer goods industries.

A typical product made of DSM Engineering Plastics’ polymer portfolio are USB-C connectors. Key performance indicators for this application are dimension... Read more

Jennifer Schillings, Arno Wilbers and Joachim Loos, DSM Materials Science Center, Geleen, The Netherlands

Read customer spotlight
Scientists discover the oldest Homo sapiens fossils at Jebel Irhoud, Morocco

Scientists discover the oldest Homo sapiens fossils at Jebel Irhoud, Morocco

New finds of fossils and stone tools from the archaeological site of Jebel Irhoud, Morocco, push back the origins of our species by one hundred thousand years and show that by about 300 thousand years ago important changes in our biology and behaviour had taken place across most of Africa.

Read more

Max Planck Institute for Evolutionary Anthropology (Leipzig, Germany)

Watch video
Contrast-enhanced 3D micro-CT of plant tissues using different impregnation techniques

Contrast-enhanced 3D micro-CT of plant tissues using different impregnation techniques

X-ray micro-CT has increasingly been used for 3D imaging of plant structures. At the micrometer reso-lution however, limitations in X-ray contrast often lead to datasets with poor qualitative and quantitative measures, especially within dense cell clusters of plant tissue specimens. The current study developed protocols for delivering a cesium based contrast enhancing solution to varying plant tissue specimens for the purpose of improving 3D tissue structure characterization within plant spec... Read more

Zi Wang, Pieter Verboven and Bart Nicolai, Department of Biosystems KU Leuven – University of Leuven Willem de Croylaan, Leuven Belgium

Read full paper
Application of nuclear volume measurements to comprehend the cell cycle in root-knot nematode-induced giant cells

Application of nuclear volume measurements to comprehend the cell cycle in root-knot nematode-induced giant cells

Root-knot nematodes induce galls that contain giant-feeding cells harboring multiple enlarged nuclei within the roots of host plants. It is recognized that the cell cycle plays an essential role in the set-up of a peculiar nuclear organization that seemingly steers nematode feeding site induction and development. Functional studies of a large set of cell cycle genes in transgenic lines of the model host Arabidopsis thaliana have contributed to better understand the role of the cell cycle comp... Read more

Antonino de Souza Junior José Dijair, Pierre Olivier, Coelho Roberta R., Grossi-de-Sa Maria F., Engler Gilbert, de Almeida Engler Janice / Institut National de la Recherche Agronomique, Université Côte d’Azur, Centre National de la Recherche Scientifique, Institut Sophia Agrobiotech, Sophia-Antipolis, France

Read full paper
Revealing the skeleton of polar dinosaur using synchrotron computed tomography

Revealing the skeleton of polar dinosaur using synchrotron computed tomography

Leaellynasaura amicagraphica was a small, bipedal, herbivorous dinosaur from the Early Cretaceous (~106 million years ago) of Australia within the Antarctic Circle of that time.

Synchrotron scans, and the resulting 3D reconstruction of the skull and post-cranial skeleton, provide a unique view of the morphology of Leaellynasaura, and allows this material to be 3D printed for display.

Read more

1University College London, UK; Monash University, Melbourne, Australia; Museum Victoria, Melbourne, Australia

Read full paper
2 BILLION years old fossils appear to represent a first experiment in megascopic multicellularity

2 BILLION years old fossils appear to represent a first experiment in megascopic multicellularity

The Paleoproterozoic Era witnessed crucial steps in the evolution of Earth’s surface environments following the first appreciable rise of free atmospheric oxygen concentrations ∼2.3 to 2.1 Ga ago, and concomitant shallow ocean oxygenation. Combined microtomography, geochemistry, and sedimentary analysis suggest a biota fossilized during early diagenesis. The emergence of this biota follows a rise in atmospheric oxygen, which is consistent with the idea that surface oxygenation allowe... Read more

Abderrazak El Albani, Laboratoire HYDRASA, UMR 6269 CNRS-INSU, Université de Poitiers, France

Learn more
AMSC Research, LLC uses Amira software to understand processes and rituals of Egyptian mummification

AMSC Research, LLC uses Amira software to understand processes and rituals of Egyptian mummification

“Scanning is important, but it is really just the first step in an immersive exploration of artifacts” says Elias. Raw data from scans taken of mummies (or other archaeological subject matter) is delivered to AMSC Research as files in a language known as DICOM. Next, these are converted into a visually readable form for analytical purposes and to launch the creative modeling process.

Elias uses Amira software to analyze scan data. Mummies are biological entities, so apart f... Read more

Dr. Jonathan Elias, AMSC Research, LLC

Learn more
The Oriental Institute of the University of Chicago uses Amira sotware to visualize and analyze Egyptian mummified birds

The Oriental Institute of the University of Chicago uses Amira sotware to visualize and analyze Egyptian mummified birds

Entering this special exhibit at the Oriental Institute Museum at the University of Chicago, you will immediately feel transported into the ancient  Nile delta marshlands with its lush green flora.

The combination of colors, video footage, bird songs, and ancient artifacts will give you the impression that you have just traveled through time and space.

At the start of the exhibit, you will find one of their most impressive artifacts, an empty shell of an ostrich egg from 3100 B... Read more

Rozenn Bailleul-LeSuer, The University of Chicago, Department of Near Eastern Languages and Civilizations

Learn more
The University of Birmingham uses Avizo software to explore the North Sea as it was 10,000 years ago

The University of Birmingham uses Avizo software to explore the North Sea as it was 10,000 years ago

The IBM Visual and Spatial Technology Centre (VISTA) specialize in large scale data capture, analysis and visualization for the Arts and Humanities at the University of Birmingham, UK. The VISTA Centre supports interdisciplinary academic research and application development for visualization, spatial analysis and imaging using state-ofthe- art technology.

Avizo software is a fundamental tool that provides new opportunities for data... Read more

IBM Visual and Spatial Technology Centre, Institute of Archaeology, Birmingham Archaeology, University of Birmingham, UK

Learn more
Exploring hominin and non-hominin primate dental fossil remains with neutron microtomography

Exploring hominin and non-hominin primate dental fossil remains with neutron microtomography

Fossil dental remains are an archive of unique information for paleobiological studies. Computed microtomography based on Xray microfocus sources (X-µCT) and Synchrotron Radiation (SR-µCT) allow subtle quantification at the micron and sub-micron scale of the meso- and microstructural signature imprinted in the mineralized tissues, such as enamel and dentine, through highresolution “virtual histology”. Nonetheless, depending on the degree of alterations undergone during fossiliza... Read more

Clément Zanolli, Laboratory AMIS, UMR 5288, University of Toulouse III - Paul Sabatier, France, and al.

Read full paper
A virtual world of paleontology

A virtual world of paleontology

Computer-aided visualization and analysis has revolutionized the study of fossils. Fossils can now be characterized in three dimensions and in unprecedented detail. The resulting digital reconstructions can be used in rigorous functional analyses. Hypotheses regarding the function of extinct organisms can therefore be tested.

Read more

Trends in Ecology & Evolution

Learn more
Paleozoic Nymphal Wing Pads Support Dual Model of Insect Wing Origins

Paleozoic Nymphal Wing Pads Support Dual Model of Insect Wing Origins

The appearance of wings in insects, early in their evolution [1], has been one of the more critical innovations contributing to their extraordinary diversity. Despite the conspicuousness and importance of wings, the origin of these structures has been difficult to resolve and represented one of the “abominable mysteries” in evolutionary biology [2]. More than a century of debate has boiled the matter down to two competing alternatives—one of wings representing an extension of the thorac... Read more

Department of Zoology, Faculty of Science, Charles University, Praha, Czech Republic and al.

Learn more
Fragmentation of wall rock garnets during deep crustal earthquakes

Fragmentation of wall rock garnets during deep crustal earthquakes

Deformation of the lithosphere by seismic slip along faults dissipates energy to the immediate surroundings as heat and elastic waves. Heat effects may occasionally cause frictional melting along the slip plane, leading to the formation of pseudotachylite, a characteristic fine-grained or glassy fault rock, interpreted as the quenched melt. Recently, it has been suggested that mechanical effects due to rapid loading, such as the formation of shiny “mirror” surfaces or pulverization of roc... Read more

Department of Geosciences, University of Oslo; Department of Earth Sciences, Utrecht University; Géosciences Montpellier, Université de Montpellier; Debye Institute for Nanomaterials Science, Utrecht University

Read full paper