Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

3D Failure Analysis of Pure Mechanical and Pure Chemical Degradation in Fuel Cell Membranes

3D Failure Analysis of Pure Mechanical and Pure Chemical Degradation in Fuel Cell Membranes

Lifetime-limiting failure of fuel cell membranes is generally attributed to their chemical and/or mechanical degradation. Although both of these degradation modes occur concurrently during operational duty cycles, their uncoupled investigations can provide useful insights into their individual characteristics and consequential impacts on the overall membrane failure.

X-ray computed tomography is emerging as an advantageous tool for fuel cell failure analysis due to its non-destructive ... Read more

Yadvinder Singh, Francesco P. Orfino, Monica Dutta, and Erik Kjeang

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Quantification of the degradation of Ni-YSZ anodes upon redox cycling

Quantification of the degradation of Ni-YSZ anodes upon redox cycling

Ni-YSZ anodes for Solid Oxide Fuel Cells are vulnerable to microstructural damage during redox cycling leading to a decrease in the electrochemical performance.

 

  • Quantification of redox damage by coupling 3D tomography, EIS and nanoindentation.
  • YSZ fracture, Ni detachment and agglomeration led to irreversible mechanical damage.
  • Ni nanoparticles obtained upon redox cycling improve electrochemical performance.
  • Loss in TPB densi... Read more

Bowen Song, Enrique Ruiz-Trejo, Antonio Bertei, Nigel P.Brandon

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Flexible all-fiber electrospun supercapacitor

Flexible all-fiber electrospun supercapacitor

Electrospun all-fiber flexible supercapacitor with nanofiber electrodes/separator.

  • Increased graphitic degree with the addition of MnACAC and thermal decomposition.
  • Enhanced capacitive performance with the addition of MnO.
  • Quantified nanofiber alignment and increased bias with MnO over undoped fibers.
  • FIBSEM tomography of nanofibers showing MnO disitribution in carbon nanofibers.

We present an all-fiber flexible supercapacitor with compo... Read more

Xinhua Liu, Max Naylor Marlow, Samuel J. Cooper, Bowen Song, Xiaolong Chen, Nigel P. Brandon, Billy Wu

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Linking defects, hierarchical porosity generation and desalination performance in metal–organic frameworks

Linking defects, hierarchical porosity generation and desalination performance in metal–organic frameworks

Composite membranes with defective metal–organic frameworks (MOFs) connect the emerging fields of MOF topological modification, MOF-polymer interfacial engineering and composite material functionalization.

Although defective MOFs can be fabricated via thermal or chemical treatment, the relationship between hierarchical MOF structure and their performance in a polymeric membrane matrix has so far not been investigated. Here we show how a modula... Read more

Weibin Liang, Lin Li, Jingwei Hou, Nicholas D. Shepherd, Thomas D. Bennett, Deanna M. D'Alessandro and Vicki Chen

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Chronic cigarette smoke exposure drives spiral ganglion neuron loss in mice

Chronic cigarette smoke exposure drives spiral ganglion neuron loss in mice

Tobacco use is associated with an increased risk of hearing loss in older individuals, suggesting cigarette smoke (CS) exposure may target the peripheral auditory organs. However, the effects of CS exposure on general cochlear anatomy have not previously been explored.

Here we compare control and chronic CS exposed cochleae from adult mice to assess changes in structure and cell survival. Two-photon imaging techniques, including the imaging of second harmonic generation (SHG) and two-p... Read more

Stephen T. Paquette, Ryan P. Dawes, Isaac K. Sundar, Irfan Rahman, Edward B. Brown & Patricia M. White

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Multi-length scale tomography for the determination and optimization of the effective microstructural properties in novel hierarchical solid oxide fuel cell anodes

Multi-length scale tomography for the determination and optimization of the effective microstructural properties in novel hierarchical solid oxide fuel cell anodes

Our parametric study shows that increasing the porosity in the spongy layer beyond 10% enhances the effective transport parameters of the spongy layer at an exponential rate, but linearly for the full anode. For the first time, local and global mass transport properties are correlated to the microstructure, which is of wide interest for rationalizing the design optimization of SOFC electrodes and more generally for hierarchical materials in batteries and membranes.

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Xuekun Lu, Oluwadamilola O. Taiwo, Antonio Bertei, Tao Li, Kang Li, Dan J.L. Brett, Paul R.Shearing

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Durable and self-hydrating tungsten carbide-based composite polymer electrolyte membrane fuel cells

Durable and self-hydrating tungsten carbide-based composite polymer electrolyte membrane fuel cells

Proton conductivity of the polymer electrolyte membranes in fuel cells dictates their performance and requires sufficient water management. Here, we report a simple, scalable method to produce well-dispersed transition metal carbide nanoparticles. We demonstrate that these, when added as an additive to the proton exchange Nafion membrane, provide significant enhancement in power density and durability over 100 hours, surpassing both the baseline Nafion and platinum-containing recast Nafion ... Read more

Weiqing Zheng, Liang Wang, Fei Deng, Stephen A. Giles, Ajay K. Prasad, Suresh G. Advani, Yushan Yan & Dionisios G. Vlachos

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X-ray tomography-assisted study of a phase inversion process in ceramic hollow fiber systems – Towards practical structural design

X-ray tomography-assisted study of a phase inversion process in ceramic hollow fiber systems – Towards practical structural design

In this study, a series of alumina hollow fibers have been prepared with varied polymer binder (polyethersulfone, PESf) concentration and new polymer-based internal coagulant (aqueous solution of polyvinyl alcohol, PVA). For the first time, the micro-channels were characterized in 3D using X-ray CT to determine micro-channel densities and diameters in the radial direction, as well as the 2D measurement of the pore size in the sponge-like layer.

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Tao Li, Xuekun Lu, Bo Wang, Zhentao Wu, Kang Li, Dan J.L. Brett, Paul R. Shearing

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EM connectomics reveals axonal target variation in a sequence-generating network

EM connectomics reveals axonal target variation in a sequence-generating network

The sequential activation of neurons has been observed in various areas of the brain, but in no case is the underlying network structure well understood. Here we examined the circuit anatomy of zebra finch HVC, a cortical region that generates sequences underlying the temporal progression of the song. We combined serial block-face electron microscopy with light microscopy to determine the cell types targeted by HVC(RA) neurons, which control song timing. Close to their soma, axons... Read more

Jörgen Kornfeld, Sam E Benezra, Rajeevan T Narayanan, Fabian Svara, Robert Egger, Marcel Oberlaender, Winfried Denk, Michael A Long

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Glass fiber length and orientation analysis of reinforced polymers (GFRP)

Glass fiber length and orientation analysis of reinforced polymers (GFRP)

Royal DSM is a global science-based company active in health, nutrition and
materials. Within DSM’s Materials Cluster DSM Engineering Plastics is a global player in specialty plastics. These materials are used in components for the electrical and electronics, automotive, flexible food packaging and consumer goods industries.

A typical product made of DSM Engineering Plastics’ polymer portfolio are USB-C connectors. Key performance indicators for this application are dimension... Read more

Jennifer Schillings, Arno Wilbers and Joachim Loos, DSM Materials Science Center, Geleen, The Netherlands

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AMSC Research, LLC uses Amira software to understand processes and rituals of Egyptian mummification

AMSC Research, LLC uses Amira software to understand processes and rituals of Egyptian mummification

“Scanning is important, but it is really just the first step in an immersive exploration of artifacts” says Elias. Raw data from scans taken of mummies (or other archaeological subject matter) is delivered to AMSC Research as files in a language known as DICOM. Next, these are converted into a visually readable form for analytical purposes and to launch the creative modeling process.

Elias uses Amira software to analyze scan data. Mummies are biological entities, so apart f... Read more

Dr. Jonathan Elias, AMSC Research, LLC

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The Oriental Institute of the University of Chicago uses Amira sotware to visualize and analyze Egyptian mummified birds

The Oriental Institute of the University of Chicago uses Amira sotware to visualize and analyze Egyptian mummified birds

Entering this special exhibit at the Oriental Institute Museum at the University of Chicago, you will immediately feel transported into the ancient  Nile delta marshlands with its lush green flora.

The combination of colors, video footage, bird songs, and ancient artifacts will give you the impression that you have just traveled through time and space.

At the start of the exhibit, you will find one of their most impressive artifacts, an empty shell of an ostrich egg from 3100 B... Read more

Rozenn Bailleul-LeSuer, The University of Chicago, Department of Near Eastern Languages and Civilizations

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Palaeoecological inferences for the fossil Australian snakes Yurlunggur and Wonambi (Serpentes, Madtsoiidae)

Palaeoecological inferences for the fossil Australian snakes Yurlunggur and Wonambi (Serpentes, Madtsoiidae)

Madtsoiids are among the most basal snakes, with a fossil record dating back to the Upper Cretaceous (Cenomanian). Most representatives went extinct by the end of the Eocene, but some survived in Australia until the Late Cenozoic. Yurlunggur and Wonambi are two of these late forms, and also the best-known madtsoiids to date. A better understanding of the anatomy and palaeoecology of these taxa may shed light on the evolution and extinction of this poorly known group of s... Read more

Alessandro Palci, Mark N. Hutchinson, Michael W. Caldwell, John D. Scanlon, Michael S. Y. Lee

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The Victoria West: earliest prepared core technology in the Acheulean at Canteen Kopje and implications for the cognitive evolution of early hominids

The Victoria West: earliest prepared core technology in the Acheulean at Canteen Kopje and implications for the cognitive evolution of early hominids

Prepared core technology illustrates in-depth planning and the presence of a mental template during the core reduction process. This technology is, therefore, a significant indicator in studying the evolution of abstract thought and the cognitive abilities of hominids. Here, we report on Victoria West cores excavated from the Canteen Kopje site in central South Africa, with a preliminary age estimate of approximately 1 Ma (million years ago) for these cores. Technological analysis shows tha... Read more

Hao Li, Kathleen Kuman, Matt G. Lotter, George M. Leader, Ryan J. Gibbon

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The first Neanderthal remains from an open-air Middle Palaeolithic site in the Levant

The first Neanderthal remains from an open-air Middle Palaeolithic site in the Levant

The late Middle Palaeolithic (MP) settlement patterns in the Levant included the repeated use of caves and open landscape sites. The fossil record shows that two types of hominins occupied the region during this period—Neandertals and Homo sapiens. Until recently, diagnostic fossil remains were found only at cave sites. Because the two populations in this region left similar material cultural remains, it was impossible to attribute any open-air site to either species. In this study... Read more

Ella Been, Erella Hovers, Ravid Ekshtain, Ariel Malinski-Buller, Nuha Agha, Alon Barash, Daniella E. Bar-Yosef Mayer, Stefano Benazzi, Jean-Jacques Hublin, Lihi Levin, Noam Greenbaum, Netta Mitki, Gregorio Oxilia, Naomi Porat, Joel Roskin, Michalle Soudack, Reuven Yeshurun, Ruth Shahack-Gross, Nadav Nir, Mareike C. Stahlschmidt, Yoel Rak & Omry Barzilai

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Echoes from the past: New insights into the early hominin cochlea from a phylo-morphometric approach

Echoes from the past: New insights into the early hominin cochlea from a phylo-morphometric approach

Investigation on cochlear variation, an indirect evidence of auditory capacities among early hominins and extant catarrhine species, in order to assess (i) the phylogenetic signal of relative external cochlear length (RECL) and oval window area (OWA), the evolutionary model with the highest probability of explaining our observed data, some hominin ancestral nodes for RECL and OWA. RECL has a high phylogenetic signal under a Brownian motion model, and is closely correlated with body mass. Our... Read more

José Braga, Priscille Bouvier, Jordan Romeyer Dherbey, Patricia Balaresque, Laurent Risser , Jean-Michel Loubes , Jean Dumoncel , Benjamin Duployer , Christophe Tenailleau

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MIA-Clustering: a novel method for segmentation of paleontological material

MIA-Clustering: a novel method for segmentation of paleontological material

Paleontological research increasingly uses high-resolution micro-computed tomography (μCT) to study the inner architecture of modern and fossil bone material to answer important questions regarding vertebrate evolution. This non-destructive method allows for the measurement of otherwise inaccessible morphology. Digital measurement is predicated on the accurate segmentation of modern or fossilized bone from other structures imaged in μCT scans, as errors in segmentation can result in inaccur... Read more

Christopher J. Dunmore​, Gert Wollny, Matthew M. Skinner

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Analysis of Void Volume in Composite Electrode of All-solid-state Lithium-ion Battery Employing FIB-SEM and Union Operation Image Processing

Analysis of Void Volume in Composite Electrode of All-solid-state Lithium-ion Battery Employing FIB-SEM and Union Operation Image Processing

We had proposed an image-processing scheme using union operation suitable for extracting target features with hierarchical dimensions from the original data, and applied it to void analysis in a composite electrode of an all-solid-state lithium ion battery (LIB). Void analysis is very important in developing better composite electrodes for all-solid-state LIBs because internal voids should increase the interfacial resistance. Film formation of electrode-solid electrolyte composites by the aer... Read more

Yuta Yamamoto , Yasutoshi Iriyama, and Shunsuke Muto

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Enhanced Imaging of Lithium Ion Battery Electrode Materials

Enhanced Imaging of Lithium Ion Battery Electrode Materials

The authors present for the first time a new methodology of contrast enhancement for 3D imaging, including novel advanced quantification, on a commercial Lithium Iron Phosphate (LFP) LiFePO4 cathode. The aim of this work is to improve the quality of the 3D imaging of challenging battery materials by developing methods to increase contrast between otherwise previously poorly differentiated phases. This is necessary to enable capture of the real geometry of electrode microstructures... Read more

Moshiel Biton, Vladimir Yufit, Farid Tariq, Masashi Kishimoto and Nigel Brandon

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Unilever uses Avizo software to visualize and understand food and detergent structures

Unilever uses Avizo software to visualize and understand food and detergent structures

Food and detergent products are composed of complex micro structures. With modern microscopic techniques we can make them visible. The microstructure greatly affects macroscopic properties such as appearance, taste, mouth feel and solubility. Making these structures visible and quantifying them is essential to the development of products with optimal product properties. A broad range of imaging techniques is used to visualize microstructure elements at different length scales. For example, X-... Read more

Gerard van Dalen, Unilever R&D Vlaardingen (The Netherlands)

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Propagation-based phase-contrast x-ray tomography of cochlea using a compact synchrotron source

Propagation-based phase-contrast x-ray tomography of cochlea using a compact synchrotron source

We demonstrate that phase retrieval and tomographic imaging at the organ level of small animals can be advantageously carried out using the monochromatic radiation emitted by a compact x-ray light source, without further optical elements apart from source and detector. This approach allows to carry out microtomography experiments which – due to the large performance gap with respect to conventional laboratory instruments – so far were usually limited to synchrotron sources. We dem... Read more

Mareike Töpperwien, Regine Gradl, Daniel Keppeler, Malte Vassholz, Alexander Meyer, Roland Hessler, Klaus Achterhold, Bernhard Gleich, Martin Dierolf, Franz Pfeiffer, Tobias Moser & Tim Salditt

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