Welcome to the Amira-Avizo Software Use Case Gallery
Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.
Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.
3D loess microstructure of loess, including skeleton particles as well as inter-particle bonding structures, was characterized through a correlative approach using μXCT and FIB-SEM
Loess, a Quaternary wind-blown deposit, is a problem soil that gives rise to frequent geohazards such as landslides and water-induced subsidence. The behavior of loess is controlled by its microstructure, consisting of silt sized
skeleton particles and complex bonding structures formed by clay-sized p... Read more
B. Yu, T.A. Dijkstra, W. Fan, I.J. Smalley, Y.N. Wei, L.S. Deng
Comparative experimental observations of cement with a flow channel subject to CO2-saturated brine flow by micro-CT scanning and CT image post processing.
Understanding CO2-induced micro-structural changes at the imperfections in wellbore cement is vital for assessing the risk of CO2 leakage through wellbore cement under geologic CO2 storage (GCS) conditions. To investigate the evolution of a flow channel width in cement under GCS conditions and the influence of effective stress and fl... Read more
Manguang Gan, Liwei Zhang, Yan Wang, Kaiyuan Mei, Xiaojuan Fu, Xiaowei Cheng, Mingxing Bai, Hejuan Liu, Xiaochun Li
Deep geothermal resources have been widely acknowledged as an alternative energy so... Read more
Zhennan Zhu, Shengqi Yang, Ren Wang, Jingyu Xie, Nuocheng Tian, Hong Tian, Jun Zheng, Guosheng Jiang, Bin Dou
In this study, the researchers investigated the compressive failure mechanisms in flax fiber composites, a promising eco-friendly alternative to synthetic composite materials, through both numerical simulations and experimental analysis. They examined the reasons behind the low compressive strength in comparison to tensile strength, focusing on the compressive-to-tensile strength ratio. A novel thermodynamically consistent continuum damage micromechanics model was introduced to capture the ev... Read more
Vedad Tojaga, Alexandros Prapavesis, Jonas Faleskog, T. Christian Gasser, Aart W. van Vuure, Sören Östlund
Recycling spent lithium-ion batteries (LiBs) guarantees the conservation of important metal resources by reducing demands on raw supply and offsetting the energy and environmental costs associated with its manufacture. Employing a molten salt as a solvent for extraction affords a much greener and simpler route to metal recovery by electrochemical means. The current mechanistic understanding of the electrochemical recovery of metals in molten salts needs to be improved for the process to be op... Read more
Mateen Mirza, Wenjia Du, Lara Rasha, Steven Wilcock, Arfon H. Jones, Paul R. Shearing, Dan J.L. Brett
The internal skeleton of the nasal cavity is sporadically and often incompletely described for many marsupial species and mammals in general. Here, I provide an anatomical survey of the ethmoid in the skulls of adult marsupials based on examination of computed tomography (CT) imagery of 29 taxa representing all the major extant groups of marsupials. (…) I compared ecological data with the number of ecto- and endoturbinals as a preliminary test to determine whether some of the interspec... Read more
Thomas E. Macrini
X-ray computed tomography (XCT) has been shown to reveal the true extent of ductile damage below the fracture surface of failed test specimens, which is often significantly underestimated when probed using 2D serial sectioning techniques and a microscope, since a single plane of material may only exhibit only a handful of resolvable voids.
In contrast XCT offers the capability to generate large datasets consisting of hundreds, if not thousands, of individually resolvable voids, where e... Read more
A. J. Cooper ; O. C. G. Tuck ; T. L. Burnett ; A. H. Sherry
Despite advances in imaging, image-based vascular systems biology has remained challenging because blood vessel data are often available only from a single modality or at a given spatial scale, and cross-modality data are difficult to integrate.
Therefore, there is an exigent need for a multimodality pipeline that enables ex vivo vascular imaging with magnetic resonance imaging, computed tomography and optical microscopy of the same sample, while permitting imaging with complementary c... Read more
Akanksha Bhargava, Benjamin Monteagudo, Priyanka Kushwaha, Janaka Senarathna, Yunke Ren, Ryan C. Riddle , Manisha Aggarwal and Arvind P. Pathak
Among natural cellular materials, pomelo peels, having a foam-like hierarchical microstructure, represent an ideal model for developing materials with high energy absorption efficiency. In this work, by combining X-ray tomographic imaging technique and digital volume correlation (DVC), in-situ stepwise uniaxial compression tests were performed to quantify the internal morphological evolution and kinematic responses of pomelo peel samples during compression.
Read more
B.Wang, B.Pan, G.Lubineau
During the last decades, X-ray (micro-)computed tomography has gained increasing attention for the description of porous skeletal and shell structures of various organism groups. However, their quantitative analysis is often hampered by the difficulty to discriminate cavities and pores within the object from the surrounding region. Herein, we test the ambient occlusion (AO) algorithm and newly implemented optimisations for the segmentation of cavities (implemented in the software Amira). (... Read more
J. Titschack, D. Baum, K. Matsuyama, K. Boos, C. Farber, W.-A. Kahl, K. Ehrig, D. Meinel, C. Soriano, S.R. Stock
3D characterisation of the particle kinematics during loess collapse is performed based on X-ray micro-computed tomography.
Particle displacements and rotations associated with the collapse are determined.
The volumetric strain is shown to be significantly heterogeneous at single-particle scale.
The evolution of particle-to-particle contacts is found to be much more complex than previously stated.
An apparatus is specially designed to perf... Read more
B. Yu, W. Fan, J.H. Fan, T.A. Dijkstra, Y.N. Wei, T.T. Wei
Investigation of Hot Pressed Polymer Electrolyte Fuel Cell Assemblies via X-ray Computed Tomography
The hot pressing process for fabricating membrane electrode assemblies (MEAs) has been widely adopted, yet little is known of its effects on the microstructural properties of the different components of the MEA. In particular, the interaction of the electrolyte, electrode and gas diffusion layer (GDL) due to lamination is difficult to probe as conventional imaging techniques cannot access the internal structure of the MEA. Here, a novel approach is used, which combines characterisation of hot... Read more
Q. Meyer, N. Mansor, F. Iacoviello, P.L. Cullen, R. Jervis, D. Finegan, C. Tan, J. Bailey, P. R. Shearing, D. J. L. Brett
The interest in potential applications produced with self-compacting fibre reinforced concrete continues to grow, but in practice, problems associated with an uneven distribution and orientation of fibres in the concrete structure occur. It is not clear what exactly influences uneven distribution of fibres in selfcompacting concrete (SCC) mixtures, especially during the casting and how different factors influence fibre orientation. The objective of this work was to investigate how rheological... Read more
Elena Jasiuniene, Vaidotas Cicenas, Paulius Grigaliunas, Zymantas Rudzionis, Arunas Aleksandras Navickas
Our team is developing a modern, cross-disciplinary approach to documentation and preservation of astromaterials, specifically lunar and meteorite samples stored at the Johnson Space Center (JSC) Lunar Sample Laboratory Facility.
Apollo Lunar Sample 60639, collected as part of rake sample 60610 during the 3rd Extra-Vehicular Activity of the Apollo 16 mission in 1972, served as the first NASA preserved lunar sample to be examined by our team in the development of a novel approach to int... Read more
K.R. Beaulieu , E.H. Blumenfeld , D.A. Liddle , E.R. Oshel , C.A. Evans , R.A. Zeigler , K. Righter , R.D. Hanna , R.A. Ketcham
The prevailing electrode fabrication method for lithium-ion battery electrodes includes calendering at high pressures to densify the electrode and promote adhesion to the metal current collector.
However, this process increases the tortuosity of the pore network in the primary transport direction and imposes severe tradeoffs between electrode thickness and rate capability. With the aim of understanding the impact of pore tortuosity on electrode kinetics, and enabling cell designs with ... Read more
Benjamin Delattre, Ruhul Amin, Jonathan Sander, Joël De Coninck, Antoni P. Tomsia and Yet-Ming Chiang
Cortical bone is permeated by a system of pores, occupied by the blood supply and osteocytes. With ageing, bone mass reduction and disruption of the microstructure are associated with reduced vascular supply. Insight into the regulation of the blood supply to the bone could enhance the understanding of bone strength determinants and fracture healing. Using synchrotron radiation-based computed tomography, the distribution of vascular canals and osteocyte lacunae was assessed in murine cortica... Read more
J.A. Núñez; A. Goring; B. Javaheri; H. Razi; D. Gomez-Nicola; E. Hesse; A.A. Pitsillides; P.J. Thurner; P. Schneider; E. Clarkin
Exploring hominin and non-hominin primate dental fossil remains with neutron microtomography
Fossil dental remains are an archive of unique information for paleobiological studies. Computed microtomography based on Xray microfocus sources (X-µCT) and Synchrotron Radiation (SR-µCT) allow subtle quantification at the micron and sub-micron scale of the meso- and microstructural signature imprinted in the mineralized tissues, such as enamel and dentine, through highresolution “virtual histology”. Nonetheless, depending on the degree of alterations undergone during fossiliza... Read more
Clément Zanolli, Laboratory AMIS, UMR 5288, University of Toulouse III - Paul Sabatier, France, and al.
The microstructural degradation of a composite silicon electrode at different stages in its cycle life was investigated in 3D using X-ray nano-computed tomography. A reconstructed volume of 36 μm × 27 μm × 26 μm from the composite electrode was imaged in its pristine state and after 1, 10 and 100 cycles. Particle fracturing and phase transformation was observed within the electrode with increased cycling. In addition, a distinct, lower X-ray attenuating phase was clearly resolved,... Read more
Oluwadamilola O. Taiwo, Melanie Loveridge, Shane D.Beattie, Donal P.Finegan, Rohit Bhagat, Daniel J.L.Brett, Paul R.Shearing
The aim of the current study is to propose a versatile, non-destructive inspection strategy to evaluate the structure of two different aircraft carbon fibre reinforced polymer (CFRP) -based composite configurations, which are widely used for structural elements, respectively layered composite and sandwich structure. X-ray computed tomography (CT) has been used as a flexible method for assessment of porosity levels in CFRP components in both types of configuration, permitting to investigate th... Read more
Elena Dilonardo, Michele Nacucchi, Fabio De Pascalis, Mauro Zarrelli, Cinzia Giannini
Multiscale tomographic analysis of the thermal failure of Na-Ion batteries
In recent years, the ability to examine the processes that cause the catastrophic failure of batteries as a result of thermal runaway has improved substantially. In this work, the effect of thermal runaway on the microstructure of the electrodes of a Na-ion battery is examined using X-ray computed tomography for the first time. The thermal failure induced via accelerating rate calorimetry enabled the examination of failed electrodes, which were subsequently compared with fresh s... Read more
Robinson, J. B., Heenan, T. M. M., Jervis, J. R., Tan, C., Kendrick, E., Brett, D. J. L., & Shearing, P. R.
In situ compression and X-ray computed tomography of flow battery electrodes
Redox flow batteries offer a potential solution to an increase in renewable energy generation on the grid by offering long-term, large-scale storage and regulation of power. However, they are currently underutilised due to cost and performance issues, many of which are linked to the microstructure of the porous carbon electrodes used. Here, for the first time, we offer a detailed study of the in situ effects of compression on a commercially available carbon felt electrode. Visualisation ... Read more
Rhodri Jervis , Matt D.R. Kok , Tobias P. Neville , Quentin Meyer , Leon D. Brown , Francesco Iacoviello , Jeff T. Gostick , Dan J.L. Brett , Paul R. Shearing