Welcome to the Amira-Avizo Software Use Case Gallery
Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.
Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.
3D loess microstructure of loess, including skeleton particles as well as inter-particle bonding structures, was characterized through a correlative approach using μXCT and FIB-SEM
Loess, a Quaternary wind-blown deposit, is a problem soil that gives rise to frequent geohazards such as landslides and water-induced subsidence. The behavior of loess is controlled by its microstructure, consisting of silt sized
skeleton particles and complex bonding structures formed by clay-sized p... Read more
B. Yu, T.A. Dijkstra, W. Fan, I.J. Smalley, Y.N. Wei, L.S. Deng
Comparative experimental observations of cement with a flow channel subject to CO2-saturated brine flow by micro-CT scanning and CT image post processing.
Understanding CO2-induced micro-structural changes at the imperfections in wellbore cement is vital for assessing the risk of CO2 leakage through wellbore cement under geologic CO2 storage (GCS) conditions. To investigate the evolution of a flow channel width in cement under GCS conditions and the influence of effective stress and fl... Read more
Manguang Gan, Liwei Zhang, Yan Wang, Kaiyuan Mei, Xiaojuan Fu, Xiaowei Cheng, Mingxing Bai, Hejuan Liu, Xiaochun Li
Deep geothermal resources have been widely acknowledged as an alternative energy so... Read more
Zhennan Zhu, Shengqi Yang, Ren Wang, Jingyu Xie, Nuocheng Tian, Hong Tian, Jun Zheng, Guosheng Jiang, Bin Dou
Li metal is considered as the most important negative electrode active material for Li-based batteries because of its high theoretical specific capacity of 3860mAh g-1, which is an order of magnitude higher than the currently used graphite, and by being the most electropositive metal. When coupled with high-capacity cathodes, either Li insertion materials or conversion chemistries, or applied in a solid-sate configuration, a leap in energy density can be obtained. The main challenge in the di... Read more
Matthew Sadd, Shizhao Xiong, Jacob R. Bowen, Federica Marone, Aleksandar Matic
In this study, the researchers investigated the compressive failure mechanisms in flax fiber composites, a promising eco-friendly alternative to synthetic composite materials, through both numerical simulations and experimental analysis. They examined the reasons behind the low compressive strength in comparison to tensile strength, focusing on the compressive-to-tensile strength ratio. A novel thermodynamically consistent continuum damage micromechanics model was introduced to capture the ev... Read more
Vedad Tojaga, Alexandros Prapavesis, Jonas Faleskog, T. Christian Gasser, Aart W. van Vuure, Sören Östlund
The research focuses on the fiber behavior following injection molding on a spiral-flow mold, particularly its fiber orientation behavior. The behavior of the glass fiber will be examined by altering key experiment settings, the screw speed and the back pressure, and employing different melt paths. The results show that the application of high back pressure and high screw speed decreased the fiber length but successfully increased the fiber orientation average to the flow direction. The desig... Read more
Ahmad Hafizh Ridho, Feng-Jung Cheng, Sheng-Jye Hwang
Three-dimensional imaging of microstructural evolution in SEM-based nano-CT
Scanning electron microscopy (SEM) is a powerful and versatile technique for materials characterization and present in many laboratories. The integration of an X-ray target holder and detector allows expanding the modalities of SEM by X-ray imaging. These little hardware adaptations enable radiography ... Read more
Jonas Fell, Christoph Pauly, Michael Maisl, Simon Zabler, Frank Mücklich, Hans-Georg Herrmann
Recycling spent lithium-ion batteries (LiBs) guarantees the conservation of important metal resources by reducing demands on raw supply and offsetting the energy and environmental costs associated with its manufacture. Employing a molten salt as a solvent for extraction affords a much greener and simpler route to metal recovery by electrochemical means. The current mechanistic understanding of the electrochemical recovery of metals in molten salts needs to be improved for the process to be op... Read more
Mateen Mirza, Wenjia Du, Lara Rasha, Steven Wilcock, Arfon H. Jones, Paul R. Shearing, Dan J.L. Brett
The internal skeleton of the nasal cavity is sporadically and often incompletely described for many marsupial species and mammals in general. Here, I provide an anatomical survey of the ethmoid in the skulls of adult marsupials based on examination of computed tomography (CT) imagery of 29 taxa representing all the major extant groups of marsupials. (…) I compared ecological data with the number of ecto- and endoturbinals as a preliminary test to determine whether some of the interspec... Read more
Thomas E. Macrini
X-ray computed tomography (XCT) has been shown to reveal the true extent of ductile damage below the fracture surface of failed test specimens, which is often significantly underestimated when probed using 2D serial sectioning techniques and a microscope, since a single plane of material may only exhibit only a handful of resolvable voids.
In contrast XCT offers the capability to generate large datasets consisting of hundreds, if not thousands, of individually resolvable voids, where e... Read more
A. J. Cooper ; O. C. G. Tuck ; T. L. Burnett ; A. H. Sherry
Among natural cellular materials, pomelo peels, having a foam-like hierarchical microstructure, represent an ideal model for developing materials with high energy absorption efficiency. In this work, by combining X-ray tomographic imaging technique and digital volume correlation (DVC), in-situ stepwise uniaxial compression tests were performed to quantify the internal morphological evolution and kinematic responses of pomelo peel samples during compression.
Read more
B.Wang, B.Pan, G.Lubineau
The complex mechanical response of open-cell foams depends strongly on the hierarchy of length scales inherent in them, from engineering-part scale to the ligament scale through the grain scale down to the crystal-lattice scale. A first step toward understanding and predicting the coordinated mechanical response across le... Read more
Jayden C. Plumb, Jonathan F. Lind, Joseph C. Tucker, Ron Kelley, Ashley D. Spear
During the last decades, X-ray (micro-)computed tomography has gained increasing attention for the description of porous skeletal and shell structures of various organism groups. However, their quantitative analysis is often hampered by the difficulty to discriminate cavities and pores within the object from the surrounding region. Herein, we test the ambient occlusion (AO) algorithm and newly implemented optimisations for the segmentation of cavities (implemented in the software Amira). (... Read more
J. Titschack, D. Baum, K. Matsuyama, K. Boos, C. Farber, W.-A. Kahl, K. Ehrig, D. Meinel, C. Soriano, S.R. Stock
Multi-modal plasma focused ion beam serial section tomography of an organic paint coating
Pigment distributions have a critical role in the corrosion protection properties of organic paint coatings, but they are difficult to image in 3D over statistically significant volumes and at sufficiently high spatial resolutions required for detailed analysis. Here we report, for the first time, large volume analytical serial sectioning tomography of an organic composite coating using a xenon Plasma Focused Ion Beam (PFIB) combined with secondary electron imaging, energy dispersive X-ray (E... Read more
Zhong Xiangli, M. Grace Burke, Philip J. Withers, Zhang Xun, Zhou Xiaorong, Timothy L. Burnett, Liu Yanwen, Stuart B. Lyon, Simon R.Gibbon
A separated vortex ring underlies the flight of the dandelion
Wind-dispersed plants have evolved ingenious ways to lift their seeds. The common dandelion uses a bundle of drag-enhancing bristles (the pappus) that helps to keep their seeds aloft. This passive flight mechanism is highly effective, enabling seed dispersal over formidable distances; however, the physics underpinning pappus-mediated flight remains unresolved. Here we visualized the flow around dandelion seeds, uncovering an extraordinary type of vortex. This vortex is a ring of recirculating... Read more
Cathal Cummins, Madeleine Seale, Alice Macente, Daniele Certini, Enrico Mastropaolo, Ignazio Maria Viola, Naomi Nakayama
3D characterisation of the particle kinematics during loess collapse is performed based on X-ray micro-computed tomography.
Particle displacements and rotations associated with the collapse are determined.
The volumetric strain is shown to be significantly heterogeneous at single-particle scale.
The evolution of particle-to-particle contacts is found to be much more complex than previously stated.
An apparatus is specially designed to perf... Read more
B. Yu, W. Fan, J.H. Fan, T.A. Dijkstra, Y.N. Wei, T.T. Wei
Reprocessing of spent nuclear fuels using molten salt media is an attractive alternative to liquid-liquid extraction techniques.
Pyroelectrochemical processing utilizes direct, selective, electrochemical reduction of uranium dioxide, followed by selective electroplating of a uranium metal. Thermodynamic prediction of the electrochemical reduction of UO2 to U in LiCl-KCl eutectic has shown to be a function of the oxide ion activity. The pO2 of the salt may be affected by the microstruc... Read more
L.D. Brown, R. Abdulaziz, B. Tjaden, D. Inman, D.J.L. Brett, P.R. Shearing
Investigation of Hot Pressed Polymer Electrolyte Fuel Cell Assemblies via X-ray Computed Tomography
The hot pressing process for fabricating membrane electrode assemblies (MEAs) has been widely adopted, yet little is known of its effects on the microstructural properties of the different components of the MEA. In particular, the interaction of the electrolyte, electrode and gas diffusion layer (GDL) due to lamination is difficult to probe as conventional imaging techniques cannot access the internal structure of the MEA. Here, a novel approach is used, which combines characterisation of hot... Read more
Q. Meyer, N. Mansor, F. Iacoviello, P.L. Cullen, R. Jervis, D. Finegan, C. Tan, J. Bailey, P. R. Shearing, D. J. L. Brett
The interest in potential applications produced with self-compacting fibre reinforced concrete continues to grow, but in practice, problems associated with an uneven distribution and orientation of fibres in the concrete structure occur. It is not clear what exactly influences uneven distribution of fibres in selfcompacting concrete (SCC) mixtures, especially during the casting and how different factors influence fibre orientation. The objective of this work was to investigate how rheological... Read more
Elena Jasiuniene, Vaidotas Cicenas, Paulius Grigaliunas, Zymantas Rudzionis, Arunas Aleksandras Navickas
Our team is developing a modern, cross-disciplinary approach to documentation and preservation of astromaterials, specifically lunar and meteorite samples stored at the Johnson Space Center (JSC) Lunar Sample Laboratory Facility.
Apollo Lunar Sample 60639, collected as part of rake sample 60610 during the 3rd Extra-Vehicular Activity of the Apollo 16 mission in 1972, served as the first NASA preserved lunar sample to be examined by our team in the development of a novel approach to int... Read more
K.R. Beaulieu , E.H. Blumenfeld , D.A. Liddle , E.R. Oshel , C.A. Evans , R.A. Zeigler , K. Righter , R.D. Hanna , R.A. Ketcham
Nuclear waste viewed in a new light; a synchrotron study of uranium encapsulated in grout
How do you characterise the contents of a sealed nuclear waste package without breaking it open?
This question is important when the contained corrosion products are potentially reactive with air and radioactive. Synchrotron X-rays have been used to perform micro-scale in-situ observation and characterisation of uranium encapsulated in grout; a simulation for a typical intermediate level waste storage packet. X-ray tomography and X-ray powder diffraction generated both qualitative and ... Read more
C.A. Stitt, M. Hart, N.J. Harker, K.R. Hallam, J. MacFarlane, A. Banos, C. Paraskevoulakos, E. Butcher, C. Padovani, T.B. Scott