Welcome to the Amira-Avizo Software Use Case Gallery

The IBM Visual and Spatial Technology Centre (VISTA) specialize in large scale data capture, analysis and visualization for the Arts and Humanities at the University of Birmingham, UK. The VISTA Centre supports interdisciplinary academic research and application development for visualization, spatial analysis and imaging using state-ofthe- art technology.

Avizo software is a fundamental tool that provides new opportunities for data... Read more

We had proposed an image-processing scheme using union operation suitable for extracting target features with hierarchical dimensions from the original data, and applied it to void analysis in a composite electrode of an all-solid-state lithium ion battery (LIB). Void analysis is very important in developing better composite electrodes for all-solid-state LIBs because internal voids should increase the interfacial resistance. Film formation of electrode-solid electrolyte composites by the aer... Read more

The authors present for the first time a new methodology of contrast enhancement for 3D imaging, including novel advanced quantification, on a commercial Lithium Iron Phosphate (LFP) LiFePO₄ cathode. The aim of this work is to improve the quality of the 3D imaging of challenging battery materials by developing methods to increase contrast between otherwise previously poorly differentiated phases. This is necessary to enable capture of the real geometry of electrode microstructures... Read more

Food and detergent products are composed of complex micro structures. With modern microscopic techniques we can make them visible. The microstructure greatly affects macroscopic properties such as appearance, taste, mouth feel and solubility. Making these structures visible and quantifying them is essential to the development of products with optimal product properties. A broad range of imaging techniques is used to visualize microstructure elements at different length scales. For example, X-... Read more

Couinaud based his well-known subdivision of the liver into (surgical) segments on the branching order of portal veins and the location of hepatic veins. However, both segment boundaries and number remain controversial due to an incomplete understanding of the role of liver lobes and vascular physiology on hepatic venous development. Human embryonic livers (5–10 weeks of development) were visualized with Amira 3D-reconstruction and Cinema 4D-remodeling software.

Lasers for Innovative Solutions, LLC (L4iS) is developing a new class of tomography technology with the aim of allowing material characterization in three dimensions with sub-micron resolution. The method uses a nanosecond, Q-switched, pulsed ultraviolet laser coupled with high-resolution imaging to generate highly detailed specimen models. Using this system, sequential images similar to light-sheet fluorescence microscopy are used to digitally reconstruct the specimen.

The CHEFF (Computational Heat Fluid Flow) Research group at Florida Agricultural & Mechanical University is using computational fluid dynamics to model flow and heat transfer in various engineering applications for industry, government and the private sector. The primary goal of this research is to first examine and then enhance the thermal performance of current and future low-density reticulated porous media, and explore their use as heat sinks in high power electronics (computer chips... Read more

The vascular (arterial or venous) wall is a fascinating structure. At the simplest level, we can think of the wall as being composed of three distinct, but interacting, layers . The vascular wall changes its structure in conditions such as hypertension which can cause a thickening of the wall. Unfortunately, the details of this ‘remodeling’ process are poorly understood.

Therefore, studying the 3D architecture may provide vital clues for future therapeutic targets.

R... Read more

The Division of Highway and Railway Engineering, Royal Institute of Technology (KTH) promotes advances in computational and experimental science in order to develop new materials, tools and systems for improved mobility, transportation safety and infrastructure durability. The group works on analysis and performance-based design of roads and tracks, management as well as operation and maintenance of roads.

The characterization of the porosity of ground layers in easel paintings: a first step towards understanding its role in water uptake, reactivity and material transport in 19th and early 20th century paintings. The Swiss Institute for Art Research (SIK-ISEA) is studying the studio practice of Swiss painters of the late 19th early 20th century, the materials they used for their paintings, and the deterioration processes the paintings undergo as they age.

Amongst other issues this study... Read more

For nearly 100 years, pathology for cancer diagnosis has involved a standard, but complex series of steps to process tissue biopsies procured from a patient in the clinic. Many procedures are a direct result of the fact that observation and evaluation of specimens by pathologists occur using a standard microscope (in 2D).

In 2014, the Human Photonics Laboratory at the University of Washington demonstrated that the rudimentary operations of a pathology laboratory may be replicated on wh... Read more

A team led by London Centre for Nanotechnology researchers, Prof. Ian Robinson and Dr. Bo Chen (now a professor at the Tongji University, Shanghai) used newly-developed serial block-face scanning electron microscopy (SBFSEM) and Thermo Scientific™ Avizo® Software, one dominant tool in 3D reconstructed image processing, to reveal the spatial structure of human chromosomes and nucleus quantitatively at high resolution of approximately 50 nm in three dimensions.

Ali Ertürk and his collaborators described a novel histo-chemical technique to clear spinal cord tissue of adult mice for fluorescence microscopy imaging of the intact spinal cord.

Previously, the high lipid content of the spinal cord tissue in adult mice allowed imaging of the spinal cord only through destructive histological methods, making the tracing of complete axons impossible. As applied in this study, the improved histo-chemistry enabled Ertürk and his colleagues to show that... Read more